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GEO DataSets

Functional Genomics Studies

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Items: 5

Select item 2001534971.

RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...

Organism:: Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome; Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae

Type:: Other

17 related Platforms
199 Samples

Download data: BEDGRAPH, TXT, XLSX

Series

Accession:: GSE153497

ID:: 200153497

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001860002.

Total RNAseq of Lactobacillus fermentum

(Submitter supplied) We applied total RNA sequencing of Lactobacillus fermentum strain GR1008 and GR1009 and compare the differentially expressed genes. This study aimed to find out the underlying mechanims for the differential morphology of the two strains.

Organism:: Limosilactobacillus fermentum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30868
2 Samples

Download data: XLS

Series

Accession:: GSE186000

ID:: 200186000

SRA Run Selector

Select item 3046453573.

zymo_ctr_r1_m_r_v2-v4

Organism:: Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus fermentum; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Escherichia coli; Staphylococcus aureus; Cryptococcus neoformans

Source name:: Cell sudspension containing mixture of ten inactivated microorganisms (ZymoBIOMICS Microbial Community Standard, cat-no D6300, lot-no ZRC 190633) .